SNP-Seek

Multi-crop bioinformatics resources

Databases Coming Soon
Multi-crop bioinformatics resources

Genomic variation,
ready to be queried.

SNP-Seek · genotype · variant · phenotype · reference IRGSP-1.0

SNP-Seek hosts queryable databases of crop genotypes, variants, and phenotypes. Filter millions of SNPs by accession and subpopulation, browse alignment tracks in JBrowse, and move from marker to gene. Choose a database below to launch the tools.

Explore Databases
22K+
Accessions
93M+
SNPs
2
Live Instances

Rice Oryza sativa

Rice SNP-seek database update (2017) ↗ 2 instances

Dedicated SNP-Seek instances for rice genomic panels. Each opens the interactive variant database in a new tab.

3K Rice Genomes

3K-RG
recommended start IRGSP-1.0

The 3,000 Rice Genomes Project — genotype, phenotype, and passport data for diverse rice accessions from across the globe.

3,024 accessions
29 M SNPs
open tool

19K Rice Genomes

19K-RG
IRGSP-1.0

The expanded 19,000 Rice Genomes dataset — higher coverage and broader diversity for deeper genomic and breeding analysis.

~19,000 accessions
64 M SNPs
open tool

Coming Soon

3 loci

Additional SNP-Seek instances are in preparation for other crops.

code species draft assembly status
ZM Maize Zea mays B73 · AGPv4 In preparation
TA Wheat Triticum aestivum CS · RefSeq v2.1 In preparation
SB Sorghum Sorghum bicolor BTx623 · v3.1 In preparation